PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012273
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 181aa    MW: 20466.2 Da    PI: 7.8261
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012273genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.7e-3961001100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++     r da+sslv+eA+ar rdPvyG+vg i+ lq+q++ql+ +la+++
  DCAR_012273   6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQQ-----RGDAVSSLVFEANARSRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 98 
                  7*********************************************98.....*******************************************99 PP

       DUF260  99 ee 100
                  +e
  DCAR_012273  99 AE 100
                  87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1015101IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-38698IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVGATPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK IFGASNVSKM LQQRGDAVSS  60
LVFEANARSR DPVYGCVGAI SYLQNQVSQL QMQLAVAQAE ILCFQMQQQQ QQQQQDHHHQ  120
QPNNIPITTQ QMMNQDEKSL LLSTSNFDYN LLQQQYLNFS STTSNNIVMQ DPPKRESLWT  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080777.13e-81PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW32e-73LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A068ULU34e-83A0A068ULU3_COFCA; Uncharacterized protein
STRINGVIT_06s0004g07200.t013e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-69LBD family protein